PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014320
Common NameLOC8258310, RCOM_1497630
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 445aa    MW: 48405.5 Da    PI: 7.7909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014320genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-09122143426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    + C+f+ + G C+yGd+C+F H+
  30147.m014320 122 KVCNFWVQ-GKCSYGDKCRFLHS 143
                    68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5493157IPR000571Zinc finger, CCCH-type
SMARTSM003560.873156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601118145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7119143IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6120144IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-7121143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-8122141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.5E-17142255IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.4E-6149188IPR001680WD40 repeat
SuperFamilySSF509781.56E-47149437IPR017986WD40-repeat-containing domain
PfamPF004006.4E-5152188IPR001680WD40 repeat
PROSITE profilePS5029421.621156358IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.385156197IPR001680WD40 repeat
PRINTSPR003205.1E-6175189IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780175189IPR019775WD40 repeat, conserved site
SMARTSM003205228265IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.0E-30256437IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.7E-4272309IPR001680WD40 repeat
PfamPF004000.008277309IPR001680WD40 repeat
PROSITE profilePS5008212.28279318IPR001680WD40 repeat
PRINTSPR003205.1E-6296310IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780296310IPR019775WD40 repeat, conserved site
SMARTSM003207.4E-4312349IPR001680WD40 repeat
PfamPF004000.023314348IPR001680WD40 repeat
PRINTSPR003205.1E-6336350IPR020472G-protein beta WD-40 repeat
SMARTSM00320140353396IPR001680WD40 repeat
SMARTSM003207.5399436IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0005515Molecular Functionprotein binding
GO:0016905Molecular Functionmyosin heavy chain kinase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDLDAQGGNT NSNRVFNRLG GAQLSSSTND PRQQKVCHHW RAGRCNRFPC PYLHRELPPP  60
PPPHGSNGHS SSNNNAPSKR GFSNDSGFSG PSGSRRSGNF NNASSWGRVG NNSNKVLRKT  120
EKVCNFWVQG KCSYGDKCRF LHSWNLGESF SLLTQLDGHQ KVVTGIALPS GSDKLYTGSK  180
DETVRVWDCQ SGQCMAVIQL GGEVGCMISE GPWIFVGIPN VVKAWNTQTN TDLSLTGPVG  240
QVYALVVGND LLFAGTQDGA ILVWKYNAAT FNFEPAASLP GHTVAVVSLV VGANRLYSGS  300
MDHSIRVWNL ETLQCVQTLT DHTSVVMSVL CWDQFLLSCS LDQKIKVWAA TESGNLDVTY  360
THNEEHGLLT LCGMHDLEGK PVLLCSCNDN SVRLLDLPSF SERGKIFAKQ EIRAIQTGPG  420
GLFFTGDGTG QVRVWKWVAE PTAIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-191443993323Tako8
6g6n_A1e-191443993323Tako8
6g6n_B1e-191443993323Tako8
6g6n_C1e-191443993323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510854.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLB9R9H90.0B9R9H9_RICCO; F-box and wd40 domain protein, putative
STRINGXP_002510854.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein