PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014329
Common NameRCOM_1501800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 232aa    MW: 25864 Da    PI: 5.7746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014329genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-16111161255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+   +Aaka++ a+ +++g
  30147.m014329 111 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDRDVDAAKAYDCAAFRMRG 161
                    7********.**********9...6566**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-31110170IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21111170IPR016177DNA-binding domain
PROSITE profilePS5103223.723111169IPR001471AP2/ERF domain
PfamPF008478.9E-12111161IPR001471AP2/ERF domain
SMARTSM003803.7E-33111175IPR001471AP2/ERF domain
CDDcd000182.31E-27111169No hitNo description
PRINTSPR003675.3E-13112123IPR001471AP2/ERF domain
PRINTSPR003675.3E-13151171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MATSQESSVL ELISQYLLGD FPSADIFFCN LDSTLAHPNL RPVKLESDNC PASSPEPKSP  60
VSDLIQYAHD AKPEVVEPTP PQPLGLASRP INRQSPPPDS NARDDEEEKR HYRGVRRRPW  120
GKFAAEIRDP NRKGSRVWLG TFDRDVDAAK AYDCAAFRMR GRKAILNFPL EAGLADPPKN  180
TGRKRRRVKR ADVEEMPESG EESPEIWSPG EEGVSYGDEL CHLSTKPALL TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-27110170464ATERF1
3gcc_A6e-27110170464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186RKRRR
2182189RKRRRVKR
3183187KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014729.11e-171ethylene-responsive transcription factor ERF106
TrEMBLB9R9Y61e-169B9R9Y6_RICCO; DNA binding protein, putative
STRINGXP_002511011.11e-170(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-45ERF family protein