PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014401
Common NameLOC8275484, RCOM_1503360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LFY
Protein Properties Length: 385aa    MW: 43343.7 Da    PI: 6.9356
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014401genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY656.92.7e-20013701386
        FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslsei 96 
                    mdpeaf+aslfkwdpr+++ app+rlle  a +++p++a  ++  r+l +leelf+ayG+ry+t+akiaelGftv+tL++mkdeeld++m+sls+i
  30147.m014401   1 MDPEAFTASLFKWDPRTVV-APPNRLLEAVAPPPQPAAAGYSVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLNMKDEELDEMMNSLSQI 95 
                    9**************9876.77899999998888888888888888899*********************************************** PP

        FLO_LFY  97 frldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkk 192
                    fr+dllvGeryGikaavraerrrleeee +++rr l+s d+ ++ldalsqeglseepvq+ekeaagsgg+g  ++e+va        e++k+++ +
  30147.m014401  96 FRWDLLVGERYGIKAAVRAERRRLEEEE-DSRRRLLISGDT-NTLDALSQEGLSEEPVQQEKEAAGSGGGG--TWEVVAGGG-----ERTKQQQ-Q 181
                    **************************88.777777888886.57***********************9999..999999983.....2333322.2 PP

        FLO_LFY 193 qkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfry 288
                    ++rk +++   + d d++ee+  +++++g +g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfry
  30147.m014401 182 RRRKGQRK---AVDIDNDEEN--ENDENGGGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRY 272
                    22222222...3444444444..4445566789*************************************************************** PP

        FLO_LFY 289 akkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlersk 384
                    akkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahprL+iWYvPtkLrqLCh+er++
  30147.m014401 273 AKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNS 368
                    **********************************************************************************************99 PP

        FLO_LFY 385 as 386
                    a+
  30147.m014401 369 AT 370
                    86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.4E-2091369IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDPEAFTASL FKWDPRTVVA PPNRLLEAVA PPPQPAAAGY SVRPRELCGL EELFQAYGIR  60
YYTAAKIAEL GFTVNTLLNM KDEELDEMMN SLSQIFRWDL LVGERYGIKA AVRAERRRLE  120
EEEDSRRRLL ISGDTNTLDA LSQEGLSEEP VQQEKEAAGS GGGGTWEVVA GGGERTKQQQ  180
QRRRKGQRKA VDIDNDEENE NDENGGGGYE RQREHPFIVT EPGEVARGKK NGLDYLFHLY  240
EQCRDFLIQV QNIAKERGEK CPTKVTNQVF RYAKKAGASY INKPKMRHYV HCYALHCLDE  300
EASNALRRAF KERGENVGAW RQACYKPLVA IAARQGWDID AIFNAHPRLA IWYVPTKLRQ  360
LCHAERNSAT ASSSVSGGGG DHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1122083852194PROTEIN LEAFY
2vy2_A1e-1122083852194PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014401
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511083.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLB9RA580.0B9RA58_RICCO; Floricaula protein, putative
STRINGXP_002511083.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-109floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]