PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014403
Common NameLOC8275486, RCOM_1503380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 230aa    MW: 25558.2 Da    PI: 9.4243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014403genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.8e-2153102255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa a+++a+++++g
  30147.m014403  53 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAALAYDEAALRFKG 102
                    7********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3352111IPR001471AP2/ERF domain
PROSITE profilePS5103224.88253110IPR001471AP2/ERF domain
PfamPF008475.6E-1553102IPR001471AP2/ERF domain
SMARTSM003808.8E-3853116IPR001471AP2/ERF domain
CDDcd000185.65E-2053111No hitNo description
SuperFamilySSF541711.96E-2253111IPR016177DNA-binding domain
PRINTSPR003671.1E-115465IPR001471AP2/ERF domain
PRINTSPR003671.1E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDAMISALAQ VIGSSQSNPV QVHANPVSLA QSNAQHNDQP QPIQDQGNVR RRHYRGVRQR  60
PWGKWAAEIR DPNKAARVWL GTFDTAEAAA LAYDEAALRF KGSKAKLNFP ERVQGRSELG  120
YLTNREQVSN RVAAAPPPPP RPPQLLQQQY QQGYFQYPEY LLGGSSYGLN YAMAPGTYGR  180
DSSSSSSSVS SQQQPQEELV MSDPMQFGSP YSRFAHPSNR RDFDSSDARD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2652113466ATERF1
3gcc_A1e-2652113466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014403
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511085.11e-168ethylene-responsive transcription factor ERF113
SwissprotQ9FH542e-46EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLB9RA601e-167B9RA60_RICCO; DNA binding protein, putative
STRINGXP_002511085.11e-167(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]