PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014441
Common NameRCOM_1504850
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 237aa    MW: 27116.5 Da    PI: 9.1446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014441genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49151401128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF+Ptdeelv +yLk+kv + +l++ ++i++++++k++PwdLp    ++e+e yfFs++++ky++g+r nrat+sgyWkatg +k++ s+ 
  30147.m014441  15 LPPGFRFQPTDEELVFQYLKRKVLSWPLPA-SIIPDINVCKFDPWDLPG---NTEQERYFFSNKESKYPNGNRINRATASGYWKATGLEKQIGSSs 106
                    79****************************.89***************3...457899**********************************9987 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kktLvfy+g++p++++tdW+mheyrl
  30147.m014441 107 sGNHVVGMKKTLVFYRGKSPHATRTDWIMHEYRL 140
                    78889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-5910163IPR003441NAC domain
PROSITE profilePS5100556.59615162IPR003441NAC domain
PfamPF023653.1E-2616140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDHKFNLMRE GMIKLPPGFR FQPTDEELVF QYLKRKVLSW PLPASIIPDI NVCKFDPWDL  60
PGNTEQERYF FSNKESKYPN GNRINRATAS GYWKATGLEK QIGSSSSGNH VVGMKKTLVF  120
YRGKSPHATR TDWIMHEYRL VSAGTNSLNQ LEKWVLCRIF FKNRSTERNG ETIQTCNDNK  180
VNNAVVIQPR FIDFMKTDKI VWDSVSCSSS SSSSSSITEV SSSGEDHEES SSSRNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511316815171NO APICAL MERISTEM PROTEIN
1ut4_B3e-511316815171NO APICAL MERISTEM PROTEIN
1ut7_A3e-511316815171NO APICAL MERISTEM PROTEIN
1ut7_B3e-511316815171NO APICAL MERISTEM PROTEIN
4dul_A3e-511316815171NAC domain-containing protein 19
4dul_B3e-511316815171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014441
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580495.11e-159NAC domain-containing protein 83
SwissprotQ9FY936e-80NAC83_ARATH; NAC domain-containing protein 83
TrEMBLB9RA971e-177B9RA97_RICCO; Transcription factor, putative
STRINGXP_002511122.11e-178(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-81NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]