PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30156.m001712
Common NameLOC8277683, RCOM_1546610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 244aa    MW: 27474.2 Da    PI: 7.9745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30156.m001712genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.1e-071111511055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r R+ + ++f  L++l+P++     k+++ a++L +A +YI+ Lq
  30156.m001712 111 QRCRQTMGDKFRILQKLMPWD-----KRMDTATMLAEAYNYINFLQ 151
                    344799***************.....89****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.493101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-4108156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-6110155No hitNo description
Gene3DG3DSA:4.10.280.103.4E-9111159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-10112160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-4112151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDRDLKSSFA SASLLPDEET SYNSSDFSMA TNSTPLFHLS SSPPPSFSFF AQHFTSNSQT  60
FKIPKKETSL PLPDPLFTNL NPHTNNPQTS NSIVEGFSIL SSNPSQKNKR QRCRQTMGDK  120
FRILQKLMPW DKRMDTATML AEAYNYINFL QAQVKALQAM PLFDDPTSTH HSFNTDNYVC  180
ALGSVFGAMG MLTRQQLLQV LLNTPEALTR LYSQRCCLFS IEQLLALNKV TALEQQLMMF  240
GSTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KNKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30156.m001712
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515701.10.0transcription factor bHLH117
TrEMBLB9RPN21e-179B9RPN2_RICCO; DNA binding protein, putative
STRINGXP_002515701.11e-180(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-22bHLH family protein