PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30157.m000796
Common NameRCOM_1553240
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 134aa    MW: 15593.3 Da    PI: 4.7542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30157.m000796genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.11.4e-09165186127
            NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                    tgkd ++     +++ +kktL fy+gr pkg++t+Wvmh+y+
  30157.m000796  16 TGKDCKI-----KDIAIKKTLGFYEGR-PKGVRTNWVMHDYS 51 
                    4444444.....459*********765.789**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.339170IPR003441NAC domain
SuperFamilySSF1019411.96E-101669IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MQLSVMTNNP DDQKVTGKDC KIKDIAIKKT LGFYEGRPKG VRTNWVMHDY SPTFHFPTQR  60
DFVICKIKKR LDVDDEPTEE GDSSTVIVAD TRSQSWNNYG STFEGQEDTQ IQAYVQSFHG  120
YNEMDYNLDY AFQW
Cis-element ? help Back to Top
SourceLink
PlantRegMap30157.m000796
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572349.19e-52NAC domain-containing protein 62
TrEMBLB9S3P73e-97B9S3P7_RICCO; Uncharacterized protein
STRINGXP_002520616.15e-98(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.29e-09NAC transcription factor-like 9