PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30157.m000816

Common Name

RCOM_1554430

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 160aa MW: 17740.3 Da PI: 5.7499

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30157.m000816	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	7	29	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H 30157.m000816 7 HVCHKCGWPFPNPHPSAKHRRAH 29 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	9	29	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
HDNHGVHVCH KCGWPFPNPH PSAKHRRAHK KICGTIEGYK LVQSEGSTHS TMSEDEHQSD 60 EDHKTPSPQI LERSSNEKGS GAIGDRSGIS EDEVFADAVA EFPDSGSRKV IEESPEDVKK 120 LATFLASVAN NDTRTTLSYE DDAITDRGFK KMFNFNESMN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30157.m000816

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015575602.1	2e-97	uncharacterized protein LOC8270577 isoform X1
TrEMBL	B9S3R6	1e-116	B9S3R6_RICCO; Uncharacterized protein (Fragment)
STRING	XP_002520635.1	1e-117	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19

Link Out ? help Back to Top
Phytozome	30157.m000816