PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30167.m000856
Common NameLOC8272313, RCOM_1569020
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 394aa    MW: 43846.6 Da    PI: 9.8828
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30167.m000856genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.63e-44922392136
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssasnsssg 88 
                    + kk rhski+T++g+RdRRvRls+e+a++fFdLqd LGfdk+skt+eWLl ++ +aik+l+++       ssssa  c   + +  +s++ +s +
  30167.m000856  92 PFKKHRHSKICTAQGLRDRRVRLSIEIARKFFDLQDLLGFDKASKTLEWLLSKSRKAIKALAQNaegakslSSSSA-TCggGEIEGIVSKKDQSVA 186
                    569*************************************************************888875433333.4577444444444444444 PP

            TCP  89 ......kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                          ++ ++  k + + +s+a+a+nl + esrakar+rarertr km+++++ 
  30167.m000856 187 atgscnEKGTK--KMRIAAASTAAASNLVAkESRAKARERARERTRVKMCTRKSH 239
                    56553233333..344444444445555545********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-4194235IPR005333Transcription factor, TCP
PROSITE profilePS5136934.1494152IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.241215232IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MFTSTNTVNP FMLLSSSSSS YDRSPYIIDH EVNNHYVFFN HHNPPIIPQI IDAVQNVEAS  60
NNAMISKQNC DVITGDQQQY DPSSVLLPVQ KPFKKHRHSK ICTAQGLRDR RVRLSIEIAR  120
KFFDLQDLLG FDKASKTLEW LLSKSRKAIK ALAQNAEGAK SLSSSSATCG GGEIEGIVSK  180
KDQSVAATGS CNEKGTKKMR IAAASTAAAS NLVAKESRAK ARERARERTR VKMCTRKSHE  240
SKNYTDMLNQ SRSSLLNQQH HHHQQACEKL SGCNDSVKVV AHHHDHQVEE LPANNSNLSS  300
SLAKGNIIEE SILIKRKLKP STILGYQQKQ STTMGYQQNV VMFKDISCSN NLPNLPQNWD  360
INSAIARSSF CAITNMNRPA GLHLYGKLWE AENT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30167.m000856
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521201.10.0transcription factor CYCLOIDEA
TrEMBLB9S5D20.0B9S5D2_RICCO; Uncharacterized protein
STRINGXP_002521201.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-30TCP family protein