PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30167.m000867

Common Name

RCOM_1570320

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 81aa MW: 9404.46 Da PI: 4.8488

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30167.m000867	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.3	4.7e-10	7	50	2	43
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 +WT+e +l+ da + + ++ +W+tIa+ +g g t++++k 30167.m000867 7 SNWTAEQNKLFEDALAIYDKDtpdRWRTIAKIVG-GTTEEEVKKQ 50 58******************************.*****976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.0E-7	5	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-4	7	52	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.202	7	55	IPR017877	Myb-like domain
SuperFamily	SSF46689	7.03E-12	7	62	IPR009057	Homeodomain-like
CDD	cd00167	3.34E-6	8	51	No hit	No description
Pfam	PF00249	4.9E-7	8	51	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MAYGSSSNWT AEQNKLFEDA LAIYDKDTPD RWRTIAKIVG GTTEEEVKKQ FEILVNDINH 60 IESDKIPLPN YKNERRSKEC N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-27	4	72	6	74	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30167.m000867

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310232.2	3e-36	protein RADIALIS-like 4
Refseq	XP_021680048.1	4e-36	protein RADIALIS-like 3
Swissprot	Q58FS3	3e-27	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	B9S5E1	1e-53	B9S5E1_RICCO; DNA binding protein, putative
STRING	XP_002521210.1	2e-54	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF154	34	280

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	1e-29	RAD-like 6

Link Out ? help Back to Top
Phytozome	30167.m000867

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]