PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006403
Common NameLOC8274408, RCOM_1577230
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 418aa    MW: 46331.1 Da    PI: 7.7708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006403genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12351396655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L++l+P+     +k  + +++L +Av+YIk+Lq
  30169.m006403 351 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 396
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-16348407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-12349400No hitNo description
Gene3DG3DSA:4.10.280.104.8E-15350408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MESDLEHHHH FFQGHQQNHH QKQMNSGLQR YQSAPSSYFS SFQDKDFVDD FLNRPTSPET  60
ERIFARFLAN SGGSSTDNIS NQNLGAVIKQ ESPVKEAVTQ VSQQAHIMAS MNDSDQTRLH  120
RHQQQQQSNY SSGFYQSQSK PPLPDHGSGS SMDYRIMTSM AMERLSQMKP SAGNNSNLVR  180
HSSSPAGLFS NINIEVENGY AVIRGMGDFG TGSGETSYST AGRPLPSSGR MSPIAEIGNK  240
NRGKNNPDSA GFGETRSNNY VTGFPIGSWD DTAVMSAGLK RLTDDDRTLS GLNASENESG  300
EVGNHPPMLA HHLSLPKTSA ELSAIEKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR  360
ISERMRKLQD LVPNMDKQTN TSDMLDLAVD YIKDLQRQVE TLSENRSKCT CASKQQQS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006403
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571362.10.0transcription factor bHLH122 isoform X2
TrEMBLB9RI880.0B9RI88_RICCO; DNA binding protein, putative
STRINGXP_002513457.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-74bHLH family protein