PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006458
Common NameRCOM_1578390
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 522aa    MW: 57722.6 Da    PI: 5.0519
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006458genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.74.3e-441082332128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    p+G+rF P+deel+ +yL++kv+++ l+  + i ++d+y+++P+ L  k ++ +e+ewyfF++r+kky++g+r++r+++ gyWkatg dke+++ +
  30169.m006458 108 PAGYRFCPSDEELIIHYLRRKVHDQILPP-NKIISLDLYNFNPEFLAeKYANYGENEWYFFTPRAKKYKNGNRPRRSADGGYWKATGADKEIKC-R 201
                    89************************999.679999**********8556667999**************************************.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    + +vg +k Lvfy+g+ p+g+kt+W+mheyr+
  30169.m006458 202 DIVVGFRKALVFYTGKPPSGVKTNWIMHEYRV 233
                    99****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-54106265IPR003441NAC domain
PROSITE profilePS5100552.113107265IPR003441NAC domain
PfamPF023657.4E-25108233IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEVVHGDQTT LLNASVPAAH GATTTTSRLA FQNSSLTLPP PCKTLTSATS PNPEAPPEVK  60
PPILQTLSEL PLAPYDSMES SRTGSTASGS ESLPFLEEND LEFFDSFPAG YRFCPSDEEL  120
IIHYLRRKVH DQILPPNKII SLDLYNFNPE FLAEKYANYG ENEWYFFTPR AKKYKNGNRP  180
RRSADGGYWK ATGADKEIKC RDIVVGFRKA LVFYTGKPPS GVKTNWIMHE YRVDKPPPLR  240
KRKRDDGTDD NMTLDDWVLC RIYKKSEKPN VRIRKAEEPD MQLDDNEDED MDGDVRADDI  300
VVHPDYNTDS PNFGLDYVYS DHLPIDDSLF TGFSDQLQLP SFSFGGGEVG GAARASYGGA  360
ARASYGGAAR ASYGGAPTTS YGGAPTTSYG GAATTNYGLP TTEAATNYVT RSGYGYGIPY  420
GSNGDGMMVP PLQMNNTLTS RYLKENFFDY GIPQDGWYHN ANANANGNAN AALQHHQPDD  480
PNASNMVSLE KIFPRVNLQS RQNQNGEPSD SSQQQHGDKY YK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4910626516165NO APICAL MERISTEM PROTEIN
1ut4_B8e-4910626516165NO APICAL MERISTEM PROTEIN
1ut7_A8e-4910626516165NO APICAL MERISTEM PROTEIN
1ut7_B8e-4910626516165NO APICAL MERISTEM PROTEIN
3swm_A1e-4810626519168NAC domain-containing protein 19
3swm_B1e-4810626519168NAC domain-containing protein 19
3swm_C1e-4810626519168NAC domain-containing protein 19
3swm_D1e-4810626519168NAC domain-containing protein 19
3swp_A1e-4810626519168NAC domain-containing protein 19
3swp_B1e-4810626519168NAC domain-containing protein 19
3swp_C1e-4810626519168NAC domain-containing protein 19
3swp_D1e-4810626519168NAC domain-containing protein 19
4dul_A8e-4910626516165NAC domain-containing protein 19
4dul_B8e-4910626516165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006458
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513512.20.0NAC domain-containing protein 77
TrEMBLB9RIE30.0B9RIE3_RICCO; Uncharacterized protein
STRINGXP_002513512.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-50NAC domain containing protein 25