PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013647
Common NameRCOM_1585190
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 259aa    MW: 30310.4 Da    PI: 6.0763
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013647genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-091862212055
                    HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  30170.m013647 186 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 221
                    5679*****************************885 PP
2ELK38.52.4e-13141162122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++LlrKYsgyL+sLkqE+s
  30170.m013647 141 ELKNHLLRKYSGYLSSLKQELS 162
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012563.9E-294899IPR005541KNOX2
PfamPF037911.1E-245498IPR005541KNOX2
PfamPF037891.6E-10141162IPR005539ELK domain
SMARTSM011883.5E-7141162IPR005539ELK domain
PROSITE profilePS5121311.296141161IPR005539ELK domain
PROSITE profilePS5007113.005161224IPR001356Homeobox domain
SuperFamilySSF466893.59E-20162236IPR009057Homeodomain-like
SMARTSM003898.8E-13163228IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-28166227IPR009057Homeodomain-like
CDDcd000861.33E-11173225No hitNo description
PfamPF059208.3E-17181220IPR008422Homeobox KN domain
PROSITE patternPS000270199222IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MASFFFFFFA AIDELKFTFS RVGAPPEVVA RLVAARQEFE SKQRSSVNSR DNLKDPELDQ  60
FMEAYCDMLM KYREELTRPI QEAMDFMRRI ETQLNMICNG PLRIFNSDEK SEGVGSSEED  120
QDNSGGETEL PEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKEARQKLLS  180
WWELHYKWPY PSETEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN  240
AALYMDGHYM GDGPYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572849.11e-178homeotic protein knotted-1
SwissprotO041351e-145KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB9R6T40.0B9R6T4_RICCO; Homeobox protein knotted-1, putative
STRINGXP_002510027.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-130KNOTTED-like from Arabidopsis thaliana