PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013668
Common NameRCOM_1586200
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 282aa    MW: 30722 Da    PI: 8.6434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013668genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35e-152473355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  30170.m013668 24 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 73
                   9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-242283No hitNo description
SuperFamilySSF541715.89E-182282IPR016177DNA-binding domain
PROSITE profilePS5103219.1772381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-182381IPR001471AP2/ERF domain
SMARTSM003801.2E-332387IPR001471AP2/ERF domain
PfamPF008478.6E-102473IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSRQEYVAHL RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  60
AEAYDIAAIK FRGVNAVTNF DITRYDVERI MASNTLLAGE LARRNKETEI SNGAIEYNSS  120
AQNSAESIQI ENSNGNVTDW KVALYPSPQP QTNTCSDSLD QRSIICGGNY RSSNYSLAMQ  180
DLIGIESANS SQHVVDESGN RLGTHSSNPS SLVTSLSSSR EASPDKTGTT MLFAKPTLAS  240
KFVSPTSSVT SVAPWFQSAT QLRPAAAISM AHLPVFAAWN DT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013668
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510048.20.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z025e-79CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLB9R6V50.0B9R6V5_RICCO; Uncharacterized protein
STRINGXP_002510048.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.15e-61AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]