PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30170.m013679

Common Name

LOC8265260, RCOM_1586500

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 161aa MW: 18641.1 Da PI: 8.5185

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30170.m013679	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.5	7.1e-14	62	116	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+ +NRe+ArrsR RKk +e L+ + +Le +N++Lk++l + +++ l 30170.m013679 62 RKRRRMVSNRESARRSRWRKKRHLEDLTVRLNQLEFQNRDLKSQLGSVLEHCRVL 116 5779999**************************************9999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-10	58	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	60	123	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-10	60	116	No hit	No description
Pfam	PF00170	3.7E-12	62	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-11	62	116	No hit	No description
CDD	cd14702	7.17E-14	63	114	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MFFSEEAVQF EKPVFEAGLT ASDIQQILSV LESPTTDSPS SSLEESNSIS NSNRVVHCVD 60 ERKRRRMVSN RESARRSRWR KKRHLEDLTV RLNQLEFQNR DLKSQLGSVL EHCRVLWREN 120 DRLTTEYLSL QTRLSDLCHV LVTMQAMQRA SLLSSSTSTL I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	65	RKRRR
2	63	82	RRRMVSNRESARRSRWRKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30170.m013679

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002510058.1	1e-113	basic leucine zipper 4
TrEMBL	B9R6W5	1e-112	B9R6W5_RICCO; DNA binding protein, putative
STRING	XP_002510058.1	1e-112	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5996	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	5e-23	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	30170.m013679
Entrez Gene	8265260