PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013700
Common NameRCOM_1589780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 247aa    MW: 27381.4 Da    PI: 7.929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013700genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-123482355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +ah   Er RR+++++ f +L  llP++      K +K++i+ +A++Y++ L+
  30170.m013700 34 EAHILTERERRKKMRTMFTNLHALLPQL----PAKADKSTIVDEAIKYVRTLE 82
                   6899***********************6....39***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.88E-123086No hitNo description
SuperFamilySSF474593.82E-153097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.0433181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-153494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-93482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-93787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.63E-4170204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEASVAQMGQ KRNRKGAAKN LETSVTSSGE SEHEAHILTE RERRKKMRTM FTNLHALLPQ  60
LPAKADKSTI VDEAIKYVRT LEETLQTLEK QRQEKLQGAT FADSSEPSVI TVQTEAVESR  120
EAFLAIQGPS KNYPRATKMP HMLPVSLTPA CFQTWFSPNV VMNMCGDDAQ ISVCSVKKPG  180
LLTSIVYILQ KHKLDVVSAH ISSDQFRSIY MIHAHAGGAC GQYPEALSVE DTFKLAAGEM  240
NLWLLSC
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510191.20.0transcription factor bHLH95
TrEMBLB9R7980.0B9R798_RICCO; Uncharacterized protein
STRINGXP_002510191.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-49bHLH family protein