PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013752
Common NameLOC8288504, RCOM_1587630
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 212aa    MW: 23301.7 Da    PI: 8.3361
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013752genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260972e-302102196
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++
  30170.m013752   2 SCNGCRVLRKGCSETCILRSCLhwitpPEAQGHATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQVA 97 
                    6*************************99999***************************************************************** PP

         DUF260  92 aelal 96 
                    +e++l
  30170.m013752  98 VETVL 102
                    99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6451107IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR SCLHWITPPE AQGHATLFLA KFFGRSDLMS LISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQVAVET VLSGGILRPL PGLLSGVLAQ  120
NHDESSDRFS AEGYRLRNMM TWAQSKPYIN TNMNMNQASS DLNLSLTPKL TGSCRVKRGR  180
DHAVSFCTEE SSEMTTFESN GGDRKKLLNL FV
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510109.11e-157LOB domain-containing protein 38
SwissprotQ9SN238e-68LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9R7161e-156B9R716_RICCO; Uncharacterized protein
STRINGXP_002510109.11e-157(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-67LOB domain-containing protein 38