PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013849
Common NameLOC8278840, RCOM_1589640
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 276aa    MW: 31398.4 Da    PI: 7.7664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013849genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.15.3e-3051482128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya.tgkrknr.atksgy 82 
                    +pG+rF P+de+l+++yL+ k+++         ++  + ike+d+y++eP++Lp+       +k+++++wy ++k+ +  + +g+r++r ++k gy
  30170.m013849   5 APGCRFYPSDEQLLCYYLTSKTDEVGdgnndkkINGYDLIKELDLYEYEPSNLPEnacysyGYKGRRRHWYCYTKKFRVWKgEGRRRRRrKAKGGY 100
                    79*******************987765666655555668**************954777665556778********99877345555555999*** PP

            NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgra.pkgektdWvmheyrl 128
                    W+++g+ ++v++  ++ ++g++  +vfy+g++ ++  +tdWv+ ey+l
  30170.m013849 101 WRSSGRVRDVVDPgGKVVIGTRSKFVFYSGNSvQSLIRTDWVLYEYAL 148
                    ************9566679*********996615557*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-334164IPR003441NAC domain
PROSITE profilePS5100538.0334164IPR003441NAC domain
PfamPF023651.2E-166148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSFVAPGCRF YPSDEQLLCY YLTSKTDEVG DGNNDKKING YDLIKELDLY EYEPSNLPEN  60
ACYSYGYKGR RRHWYCYTKK FRVWKGEGRR RRRRKAKGGY WRSSGRVRDV VDPGGKVVIG  120
TRSKFVFYSG NSVQSLIRTD WVLYEYALMH HVKASYVLCR VFVKSRAGNS NSENVLSCCA  180
EQNVSAVRHI GIQHDGFLTP DIVEAKVHRG NSVDAENDLS KYPLGLSTKL DAFPDSNKLV  240
RTPELPGDDM LVDAGTTQEL VSILEGDFIE LDDLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-17416917170NO APICAL MERISTEM PROTEIN
1ut4_B1e-17416917170NO APICAL MERISTEM PROTEIN
1ut7_A1e-17416917170NO APICAL MERISTEM PROTEIN
1ut7_B1e-17416917170NO APICAL MERISTEM PROTEIN
3swm_A1e-17416920173NAC domain-containing protein 19
3swm_B1e-17416920173NAC domain-containing protein 19
3swm_C1e-17416920173NAC domain-containing protein 19
3swm_D1e-17416920173NAC domain-containing protein 19
3swp_A1e-17416920173NAC domain-containing protein 19
3swp_B1e-17416920173NAC domain-containing protein 19
3swp_C1e-17416920173NAC domain-containing protein 19
3swp_D1e-17416920173NAC domain-containing protein 19
4dul_A1e-17416917170NAC domain-containing protein 19
4dul_B1e-17416917170NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16991RRRHWYCYTKKFRVWKGEGRRRR
28893RRRRRR
38894RRRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013849
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510187.10.0protein CUP-SHAPED COTYLEDON 3
RefseqXP_025012897.10.0protein CUP-SHAPED COTYLEDON 3
TrEMBLB9R7940.0B9R794_RICCO; Transcription factor, putative
STRINGXP_002510187.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-22NAC family protein