PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013927
Common NameLOC8260872, RCOM_1591910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 247aa    MW: 27131.2 Da    PI: 8.5044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013927genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-193883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G+++W++I+r++  gR++k+c++rw + 
    30170.m013927 38 KGPWSAEEDRILTRLVERHGPRNWSSISRYIK-GRSGKSCRLRWCNQ 83
                     79*****************************9.***********985 PP
2Myb_DNA-binding54.13.5e-1792134347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
    30170.m013927  92 PFSPAEDQTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 134
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.283388IPR017930Myb domain
SuperFamilySSF466891.06E-3135131IPR009057Homeodomain-like
SMARTSM007179.2E-173786IPR001005SANT/Myb domain
PfamPF002492.9E-183883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-243991IPR009057Homeodomain-like
CDDcd001673.35E-154082No hitNo description
SMARTSM007174.7E-1589137IPR001005SANT/Myb domain
PROSITE profilePS5129421.26790139IPR017930Myb domain
CDDcd001671.55E-1192135No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2392138IPR009057Homeodomain-like
PfamPF002491.5E-1492134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEAAVNMCST SSSSSESSSS ESSFNNTPRS SNKPERIKGP WSAEEDRILT RLVERHGPRN  60
WSSISRYIKG RSGKSCRLRW CNQLSPNVEH RPFSPAEDQT ILAAHARYGN RWATIARLLP  120
GRTDNAVKNH WNSTLKRKAK EQQHQMMIES NFDHNEGIIV AVESSAGSIM PRMAVQEEDV  180
LTALTLAPPG IGGGSGGDSG TNGGGMVADN RAESLPSGFW DVMRNVIARE VREYMSSSLN  240
ETSPGFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-413413954159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-413413954159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510273.10.0transcription factor MYB77
TrEMBLB9R7I00.0B9R7I0_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002510273.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-58myb domain protein 77