PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013995
Common NameLOC8288886, RCOM_1593730
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 388aa    MW: 43288.1 Da    PI: 4.8288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013995genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.34.2e-121811612128
            NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
                    eel    L+k ++g +l+  +vi++v+ y++ P+ Lp+        wy   ++         +n at+ g+Wk +g+  +++s ++  +g  +tL 
  30170.m013995  18 EELF-ISLEKMAHGYPLPN-NVITDVNPYNYSPSYLPQ------GIWYLIRSK---------ENGATDLGFWKVKGEASKLFS-TSYITGWMTTLE 95 
                    6666.45888888999888.89**************92......235544333.........355899***************.9999******** PP

            NAM 108 fykgrapkgektdWvmheyrl 128
                    f++g+ p+ +kt+W m+ey +
  30170.m013995  96 FFEGQVPRERKTNWQMQEYWI 116
                    *******************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5057139IPR003441NAC domain
SuperFamilySSF1019417.32E-2116138IPR003441NAC domain
PfamPF023655.4E-618114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MYPPPNPVPD IGLNSTAEEL FISLEKMAHG YPLPNNVITD VNPYNYSPSY LPQGIWYLIR  60
SKENGATDLG FWKVKGEASK LFSTSYITGW MTTLEFFEGQ VPRERKTNWQ MQEYWITQKG  120
PGENSKKKET SSLCRVFLGG EQGLDYQKRQ EMASLHIADH TLVHSTESIV LKANNGTSNG  180
STSKHVVDKD DETGVVAVTG EPPNYLVENQ PEIDYFPRGD YLELLDLDNP ASPSSSSDNS  240
SCLTMSSDEY FDSLALLREL DSESNQDLVQ KNENCKFSIS VSFKPNEVLM VPASPVGSLS  300
SNEESRQGIL GTGLSLPALV DDNENLVDVV RSQKADYRDE GPSNSHDAGT SSSRQHPSQD  360
GERKAAKGRK KKLRKNKYSC FMPFYFLF
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510344.10.0NAC domain-containing protein 26
RefseqXP_025013159.10.0NAC domain-containing protein 26
TrEMBLB9R7Q10.0B9R7Q1_RICCO; Uncharacterized protein
STRINGXP_002510344.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-13NAC 014