PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014046
Common NameLOC8288934, RCOM_1594410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 95aa    MW: 10815.3 Da    PI: 8.4603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014046genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09650345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +l+ +a + + ++   +W+  ar +g g+t +++k ++ 
    30170.m014046  6 SWTPKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTIEEVKRHYE 50
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.569257IPR017884SANT domain
SMARTSM007173.4E-7355IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-12660IPR009057Homeodomain-like
CDDcd001673.03E-6653No hitNo description
Gene3DG3DSA:1.10.10.602.0E-4659IPR009057Homeodomain-like
PfamPF002492.8E-6650IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASSSSWTPK QNKLFENALA IYDKDTPDRW HNLARAVGGK TIEEVKRHYE LLVEDVREIE  60
AGHVPLPNYK KAGLGSKGYC SFVEEEQRLK GLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-32295693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510392.15e-66protein RADIALIS-like 3
SwissprotQ1A1739e-37RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9R7U91e-64B9R7U9_RICCO; DNA binding protein, putative
STRINGXP_002510392.12e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-39RAD-like 6