PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014098
Common NameRCOM_1595770
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 739aa    MW: 81419.2 Da    PI: 6.4034
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014098genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094484851954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e+  LAk++gL+ +qV +WF N R +
  30170.m014098 448 FEHflHPYPNDSEKIMLAKQTGLSRNQVANWFINARVR 485
                    664459******************************88 PP
2BELL125.81.6e-40312383172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erq+lq+kk+kLls+l+eVd+rY+qy++q+q v+ssF++vag+g+ak+Yt+lAl++iSrhFrcL+dai++qi
  30170.m014098 312 ERQDLQNKKTKLLSILDEVDRRYRQYYNQMQLVVSSFDMVAGHGAAKSYTALALQTISRHFRCLRDAISSQI 383
                    799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.1E-57233381IPR006563POX domain
PfamPF075263.3E-49239380IPR006563POX domain
PROSITE profilePS5007112.519426489IPR001356Homeobox domain
SMARTSM003891.3E-10429493IPR001356Homeobox domain
CDDcd000861.59E-13429490No hitNo description
SuperFamilySSF466892.95E-17430495IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27432494IPR009057Homeodomain-like
PfamPF059201.3E-17446485IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MATYYAGLSS QRENLQSPYP GDQKLASYSE HPSHHSNMTV YLNHASAAGS YSEFLSGSSL  60
SSHNCAEFPS VGDRNEMVFI PPTSDTMNLQ SIDGHIDTSA GNPVGNPVNG DPQVVSRTQV  120
GILGNDLNAQ SQGLSLSLGT EMQSAISVPS FQYQNPNVIL PSFSSLHLPI LGKWMLSCEG  180
DESNQSKGLK SSECLLTFSG GNHTPIKAEV SRNPQCLDSH RDIHTDAYMY QPSSYANAIT  240
NSKFLKAAQQ LLDKVVSVRK VLKQPPSDKC LDETKETDAK ANKQSIPLSS SGMSSGPKES  300
IANSSSELSP AERQDLQNKK TKLLSILDEV DRRYRQYYNQ MQLVVSSFDM VAGHGAAKSY  360
TALALQTISR HFRCLRDAIS SQIEIVRKSL GEEDTSANGQ GGIPRLRYVD QQLRQQRALQ  420
QLGVMRHAWR PQRGLPESSV SILRAWLFEH FLHPYPNDSE KIMLAKQTGL SRNQVANWFI  480
NARVRLWKPM VEEIYKEEFG DLEANSRSSQ DDDATKALGE NQLASDNRLD ELQDSLTSAA  540
ADGIQTGQVY DRKPDRIPDV EMKRPMGKTV LQNCSHVDNI IDTGIMKFQH EFRSNMDDHS  600
SCPDKNTPHD PHGVGSLMPG AFKYDISALS EFAIGSQVSL ALGLQQHESD AFPMAGGNHI  660
RSSNMATSSM GADTVDYHCM DSGKQQDSLR EFLLLRASFV AQKSVLSREG LSSSGITRKT  720
EITSSVMALC CPLFFLLMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-16435493563Homeobox protein Meis2
4xrm_B7e-16435493563Homeobox protein Meis2
4xrs_A5e-16435492158Homeobox protein Meis1
4xrs_B5e-16435492158Homeobox protein Meis1
5bng_A6e-16435493159Homeobox protein Meis2
5bng_B6e-16435493159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576234.10.0BEL1-like homeodomain protein 3 isoform X1
RefseqXP_015576237.10.0BEL1-like homeodomain protein 3 isoform X1
RefseqXP_015576244.10.0BEL1-like homeodomain protein 3 isoform X1
RefseqXP_025012697.10.0BEL1-like homeodomain protein 3 isoform X1
TrEMBLB9R8030.0B9R803_RICCO; Bel1 homeotic protein, putative
STRINGXP_002510446.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-112BEL1-like homeodomain 3