PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014173
Common NameLOC8274650, RCOM_1597570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 406aa    MW: 44153.1 Da    PI: 9.1219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014173genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05171193223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C  Cg++F+  ++L+ H+++ H
  30170.m014173 171 TCAQCGEVFPKTESLELHQKVrH 193
                    8*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66170198IPR007087Zinc finger, C2H2
SuperFamilySSF563994.51E-26195402No hitNo description
Gene3DG3DSA:3.90.228.103.1E-12197402IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MALLTFLPEQ TEHAKQPSKR KGKQQKQKQK QPSSWDQIKN LLTCKQIEGS SVHDPSKNSN  60
NIGYSKLGSS CSSICSFRDI VHGNTRVVHR ADNSPESSTV GQETGLLSRK ATGGSSTRTL  120
GGSGRSNGGA TYSSHVSSSR GMQFRKLSGC YECHMIVDPS RYPAPRTTIC TCAQCGEVFP  180
KTESLELHQK VRHAVSELGP EDSGRNIVEI IFKSSWLKKD NPICKIERIL KVHNTQRTIQ  240
RFEDCRDAVK TRALNSTKKN PRCAADGNEL LRFHCTTLSC SLGARGSSSL CGSIPCCGVC  300
TIIRHGFQGK ECKGVRTTAS SGRAHDSLLG CTDGRRAMLV CRVIAGRVKR VADDTPPAEE  360
EALAAAGSYD SVAGYAGIYS NLEELFVFNP RAILPCFVVI YSALES
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014173
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510523.10.0uncharacterized protein LOC8274650
TrEMBLB9R8800.0B9R880_RICCO; Nucleic acid binding protein, putative
STRINGXP_002510523.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-170C2H2-like zinc finger protein