PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30170.m014389

Common Name

LOC8273628, RCOM_1601580

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

WOX

Protein Properties

Length: 231aa MW: 26493.9 Da PI: 5.177

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30170.m014389	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.3	3.6e-20	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eqle+Le+ F + + +p +++++e+A++l ++e++V++WFqNrRa+ k+ 30170.m014389 80 RQRWAPKAEQLEILESIFTQsKATPGRQRIKEIATQLslhgPISETNVYNWFQNRRARSKR 140 89***************989***********999889**************97 PP
2	Wus_type_Homeobox	90.2	2e-29	79	142	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P++eQ++iLe+++++ tP +++i++i+++L+ +G i+++NV++WFQNr+aR+++kq 30170.m014389 79 SRQRWAPKAEQLEILESIFTQSKATPGRQRIKEIATQLSLHGPISETNVYNWFQNRRARSKRKQ 142 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.511	76	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-17	78	144	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-15	78	145	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.5E-15	78	143	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-17	80	140	IPR001356	Homeobox domain
CDD	cd00086	3.56E-13	80	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEEGQYQKEL LFGSGLGVKV MTDDQMETLR KQISVYATIC ESLVQMHKAI SDQNDFSGMR 60 LQNPYAGPFF SYTLNKIPSR QRWAPKAEQL EILESIFTQS KATPGRQRIK EIATQLSLHG 120 PISETNVYNW FQNRRARSKR KQSALAPSPP PPPPNNRESQ VEVEPEPEPE PELELETAKE 180 KRTQLDDNLA FMVNHMYFHT PEIGGIDQLI GKAEVPMSYD SYWQVDQHDL L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30170.m014389

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM150789	0.0	HM150789.1 Ricinus communis microsatellite RC-232 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002510692.1	1e-173	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	5e-52	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	B9R8P9	1e-172	B9R8P9_RICCO; DNA binding protein, putative
STRING	XP_002510692.1	1e-173	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-50	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	30170.m014389
Entrez Gene	8273628

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]