PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30171.m000407
Common NameRCOM_1603380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 661aa    MW: 75726.6 Da    PI: 6.2641
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30171.m000407genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.12.9e-5661331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s
  30171.m000407   6 LPPGFRFHPTDEELVAYYLKRKINGHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS 100
                    79****************************.99***************6434555777************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++vg+kktLv+y+grap+g +tdWvmheyrl
  30171.m000407 101 -QMRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
                    .9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-634156IPR003441NAC domain
PROSITE profilePS5100561.6916156IPR003441NAC domain
PfamPF023656.9E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEI PTGLQDAYAL CRVFKKSANI PKIGEHYAST SNQMASEHSS  180
SIELYSEGRC EDFESSNYQM PIDTSSPSIP NGSPLHHHLD QTRDHGKWKP FIPEDPFSFS  240
SSPSFSNYGS IPYPPSKVDI ALECARLQHR FSVPPLQVED FPQVGLTDMK LMRSISMHEN  300
SNRTDILQEI LSVAHASQEL INQSNIQDTW GGNYSSDNND FTFIAGKDVH GNFYSDMNSI  360
RCIDKSWADP NVRYTEIGNL DEGFKTERMV ENLRWIGMSN EELEKSFMEE HKVVPVENIS  420
SFQSREEHEI QGNNVHNEED CMGFNDTDDY SLEFINDDAN ANFIGEGNVD DLASSPSFEV  480
VEEIKVNHGM FVSTRQAAET FFHQLVPSQT VKIHLNPETA ENFSVEKVDM QAQVKRFKTV  540
SKDSKFNMGI SKLIQPWKKI ARTIICMIVI LLLHCLYMGN EKLTVHGLME NGSGEEMRVC  600
PKNKKNIQQR NKWIDDKKEN DLLVIIRGGN RFSVILRKLG LFLTVSLALC TMWFNHIILT  660
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-56215611168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30171.m000407
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579297.10.0NAC domain-containing protein 86
RefseqXP_025014445.10.0NAC domain-containing protein 86
TrEMBLB9SKR00.0B9SKR0_RICCO; Uncharacterized protein
STRINGXP_002526579.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-174NAC domain containing protein 28