PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30171.m000418
Common NameLOC8266514, RCOM_1604380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 468aa    MW: 51784.6 Da    PI: 5.6898
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30171.m000418genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-163983147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
    30171.m000418 39 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 83
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-163387IPR009057Homeodomain-like
PROSITE profilePS5129421.4763488IPR017930Myb domain
TIGRFAMsTIGR015575.4E-173786IPR006447Myb domain, plants
SMARTSM007172.5E-133886IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-93979IPR009057Homeodomain-like
PfamPF002495.4E-143982IPR001005SANT/Myb domain
CDDcd001672.08E-104184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSLNAGLHNV TGPQLKEQFS CGSDYSPKAR KPYTITKQRE RWTEEEHKKF LEALKLYGRA  60
WRRIEEHVGT KTAVQIRSHA QKFFSKVVRE GSGSSTSAVE PIEIPPPRPK RKPMHPYPRK  120
MAHPLNKELS ITEQPLRSSS PNFSISEQEN QSPTSVLSAV GSDVLGSTDS NPPNCSSSPM  180
SCAGGSHLDD FQICEPNSAP ENNESPSPAP ATAEAHDEQS LKVQKLELFP EENAFAEEGV  240
GEETSTRSLK LFGKTVLVNE CNRPSSPANG SPTLDTNDEK PVQPLPWKPM AIELQLGNGE  300
CNWSNLPQGP PGSLCYLQLQ KENSNSGEVG SATPFPWWAF YGGMPYPFIP CHKQEPATEE  360
HLDSSGEDIQ YKEIQKEGSW TGSNSGSVNE GENADKNMDG ETESRHFSCE VKELYPVLEL  420
KTSVKTASTN KCMKGFVPYK KRTAVERDSQ SSSITGEERE ERKIRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30171.m000418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3821527e-51FQ382152.1 Vitis vinifera clone SS0ABG69YH11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526589.10.0protein REVEILLE 1 isoform X1
TrEMBLB9SKS00.0B9SKS0_RICCO; DNA binding protein, putative
STRINGXP_002526589.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-62MYB_related family protein