PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008669
Common NameRCOM_1616720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 192aa    MW: 21848.1 Da    PI: 8.8163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008669genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.39.7e-26117171159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK vk+s +p    rCt+++C vkk+v+r ++d+++v++tYeg Hnh+
  30174.m008669 117 LDDGYRWRKYGQKAVKNSSYP----RCTHHTCIVKKQVQRLSKDTSIVVTTYEGIHNHP 171
                    59****************877....6********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-26104171IPR003657WRKY domain
SuperFamilySSF1182908.76E-23110172IPR003657WRKY domain
PROSITE profilePS5081123.055112173IPR003657WRKY domain
SMARTSM007745.6E-30117172IPR003657WRKY domain
PfamPF031068.5E-19118171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEGQETPQPP LLVHELPPQN SPYLFTPPHP LLPSSSLHPP VIDPQVVLPD IDWVALLSSQ  60
SVVGENRPMM MENASLIGET GAEEEKGNKD KLRKSGRIKK HITPRFAFQT RSADDILDDG  120
YRWRKYGQKA VKNSSYPRCT HHTCIVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLT  180
PLLKQMQFLT RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-19107170774Probable WRKY transcription factor 4
2lex_A3e-19107170774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008669
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276003e-60KT827600.1 Manihot esculenta WRKY transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015844.11e-142probable WRKY transcription factor 43 isoform X2
SwissprotQ8GY119e-49WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBLB9RDY71e-141B9RDY7_RICCO; WRKY transcription factor, putative
STRINGXP_002511926.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.27e-52WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]