PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008755
Common NameLOC8265783, RCOM_1608400
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 221aa    MW: 24890.6 Da    PI: 4.8399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008755genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.9e-21126176255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  30174.m008755 126 QYRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETPEDAALAYDQAAFKMRG 176
                    59*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-32126185IPR001471AP2/ERF domain
PROSITE profilePS5103223.841126184IPR001471AP2/ERF domain
SMARTSM003801.3E-38126190IPR001471AP2/ERF domain
CDDcd000186.34E-31126186No hitNo description
SuperFamilySSF541713.33E-23126185IPR016177DNA-binding domain
PRINTSPR003672.8E-10127138IPR001471AP2/ERF domain
PfamPF008476.7E-15127176IPR001471AP2/ERF domain
PRINTSPR003672.8E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MWGGNTADYG EFPLFDSIQQ YLLEDHEFQT LTSVPPFNSF QENSSLTSLL LTDPSFDVDD  60
IDDRISCSFS STDLLDEWIN SSDQLDSTVN IKAEIPDEVA STLEDAVTSP NAETAGKKNA  120
PSKGWQYRGV RRRPWGKYAA EIRDPKKNGA RVWLGTYETP EDAALAYDQA AFKMRGCKAK  180
LNFPHLIGSN DYQPPVRVSP KRRSLDPTTL LINHDSPKRR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31122191170ATERF1
3gcc_A2e-31122191170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200220KRRSLDPTTLLINHDSPKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008755
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511588.11e-164ethylene-responsive transcription factor 13 isoform X1
SwissprotQ8L9K14e-47ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLB9RCZ91e-163B9RCZ9_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002511588.11e-164(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-49ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]