PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008757
Common NameLOC8265785, RCOM_1608420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 204aa    MW: 22913.3 Da    PI: 4.8465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008757genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18108158355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr ++ +g+++A+Ir+p++ g  +r +lg+++t+e+Aa a+++a+ k++g
  30174.m008757 108 YRGVRKRP-WGKYAAQIREPKKKG-ATRLWLGTYDTPEDAALAYDRAAFKIRG 158
                    9*******.**********97744.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.9E-36107172IPR001471AP2/ERF domain
PROSITE profilePS5103223.275107166IPR001471AP2/ERF domain
CDDcd000182.69E-32108168No hitNo description
PfamPF008479.8E-14108158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-30108167IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20108167IPR016177DNA-binding domain
PRINTSPR003671.2E-13108119IPR001471AP2/ERF domain
PRINTSPR003671.2E-13148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MYQDSNSNSF QHSDLSFILE CISHYLLDET EILAAATSIT PLHCYNSNSN SFSSLTENFW  60
SDLLVKLDSG DAILQSASNE EEEEEEEEET IMQTKKAKEK INGNSFSYRG VRKRPWGKYA  120
AQIREPKKKG ATRLWLGTYD TPEDAALAYD RAAFKIRGSK AKLNFPHLAG SHASEMESSL  180
FNCTSPSSGN ASPWFRMTNL DSEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-27108166360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008757
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511590.11e-151ethylene-responsive transcription factor 11
TrEMBLB9RD011e-150B9RD01_RICCO; DNA binding protein, putative
STRINGXP_002511590.11e-150(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-35ethylene-responsive element binding factor 13