PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008775
Common NameLOC8265803, RCOM_1608820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 32975 Da    PI: 8.066
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008775genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-18137191256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq   Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  30174.m008775 137 RKKLRLSKEQSLLLEETFKEHNTLNPKQKLALAKQLNLKPRQVEVWFQNRRARTK 191
                    788899***********************************************98 PP
2HD-ZIP_I/II125.72e-40137226191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlskeq+ lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  30174.m008775 137 RKKLRLSKEQSLLLEETFKEHNTLNPKQKLALAKQLNLKPRQVEVWFQNRRARTKSKQTEVDCEYLKRCCENLTQENRRLQKEVQELR-AL 226
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.3E-341104IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466893.55E-19123195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-19126193IPR009057Homeodomain-like
PROSITE profilePS5007117.427133193IPR001356Homeobox domain
SMARTSM003895.8E-16135197IPR001356Homeobox domain
PfamPF000462.2E-15137191IPR001356Homeobox domain
CDDcd000861.80E-14137194No hitNo description
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
PfamPF021831.6E-11193227IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.6E-26193236IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEDKDDGLGL GLSLSLGGQE KHQNQPSLKL NLMPFPSLFM QNTHHSTSLN DLFQSSDRNA  60
DTRSFQRGID MNRMPLFADC DDENGVSSPN STISSLSGKR SEREQIGGEE MEAERASCSR  120
GGSDDEDGGA GGDDGSRKKL RLSKEQSLLL EETFKEHNTL NPKQKLALAK QLNLKPRQVE  180
VWFQNRRART KSKQTEVDCE YLKRCCENLT QENRRLQKEV QELRALKLSP QLYMHMNPPT  240
TLTMCPSCER VAVSSSAAPS RQPPNSQPQR PVPVKPWAAL PIQHRPFDTP ASRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141SRKKLRL
2185193RRARTKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008775
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511608.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-111HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLB9RD190.0B9RD19_RICCO; Homeobox protein, putative
STRINGXP_002511608.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-86homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]