PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008790
Common NameLOC8265818, RCOM_1609170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 276aa    MW: 30424.5 Da    PI: 6.3689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008790genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1892141255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  30174.m008790  92 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 141
                    69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-2192150IPR016177DNA-binding domain
PROSITE profilePS5103223.27592149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-3292150IPR001471AP2/ERF domain
SMARTSM003801.2E-3692155IPR001471AP2/ERF domain
PfamPF008477.6E-1392141IPR001471AP2/ERF domain
PRINTSPR003672.3E-1093104IPR001471AP2/ERF domain
CDDcd000189.01E-3293151No hitNo description
PRINTSPR003672.3E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEKHINLDID AQDNFLPSFS TTITTSTSTS SSSTSTTTTT SSTSSCFKKQ ENRLAPKGST  60
KADRQELESG NNNESSRKKQ KSDNNENAKH PTYRGVRMRS WGKWVSEIRE PRKKSRIWLG  120
TYPTAEMAAR AHDVAALAIK GNSAYLNFPE LALGLPRPAT KAPKDIQVAA AKAATAVNFL  180
EKTQSDVEAG MSQAEGSSSL VIDNTRESTS SPSTATTIAT TSNDSDDTLF DLPDLFVEGI  240
DRHKNDFLHY SPSWQLCAAD TGFRLEEPYL WEYCNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1887149972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511623.10.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-67ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLB9RD340.0B9RD34_RICCO; Transcriptional factor TINY, putative
STRINGXP_002511623.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]