PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008897
Common NameLOC8270647, RCOM_1612270
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 203aa    MW: 22322.4 Da    PI: 8.4997
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008897genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.4e-3971071100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l+aela
  30174.m008897   7 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRFDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVSLQAELA 102
                    7***********************9989******************************************************************** PP

         DUF260  96 llkee 100
                    +++++
  30174.m008897 103 YIQAR 107
                    99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.9236108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNGGGGPCGA CKFLRRKCLK GCIFAPYFDS DQGTAHFAAV HKVFGASNAS KLLLRIPAHK  60
RFDAVVTLCY EALARVRDPV YGCVGHLFTL QQQVVSLQAE LAYIQARLST LQRHQHPSQP  120
AQSHSQTSVL SSSTSEMPSN SNMSMHFDQL QLQPQHVAVS ESELTNVCHP LGPQLENDEL  180
QALARDFVSR YLPGVRFKPT SSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3831017104LOB family transfactor Ramosa2.1
5ly0_B1e-3831017104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008897
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511729.11e-150LOB domain-containing protein 19
SwissprotO813228e-70LBD31_ARATH; LOB domain-containing protein 31
TrEMBLB9RDE01e-148B9RDE0_RICCO; LOB domain-containing protein, putative
STRINGXP_002511729.11e-149(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-63LOB domain-containing protein 31