PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008961
Common NameLOC8258511, RCOM_1613750
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 291aa    MW: 31861.3 Da    PI: 8.8306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008961genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-203181256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAaka+++a+++l+ge
  30174.m008961 31 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAAKAYDEAARALRGE 81
                   589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.49E-313188No hitNo description
SMARTSM003804.7E-363194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-283189IPR001471AP2/ERF domain
PfamPF008474.3E-153181IPR001471AP2/ERF domain
PROSITE profilePS5103220.313188IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-193288IPR016177DNA-binding domain
PRINTSPR003674.8E-73243IPR001471AP2/ERF domain
PRINTSPR003674.8E-75470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAGLEALKNP TAATTAKTTN MAQPNKVAVR RFVGVRQRPS GRWVAEIKDS SQRVRLWLGT  60
YDTPEEAAKA YDEAARALRG ENARTNFASV NPNSYHSGSS PSNGGFVSES DGRHSLSFSS  120
LKAKLSKNLQ SIMARTTESR STKNRVSDHF TFANIFHFRS QQYQKPVDMK KIEKVVQPSI  180
IVPHAAENHE LEQSSLETSS VSDCSNEWIG FRQHGVDSDG SDNGEVSIGD QGLVDQMMCW  240
IESPEIGVET SRSKRFKVAS SVVIPPTFSG SASPSFCGSP FHGHNSSRFE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14311001480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008961
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511793.10.0ethylene-responsive transcription factor ESR2
TrEMBLB9RDK40.0B9RDK4_RICCO; Uncharacterized protein
STRINGXP_002511793.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-19related to AP2 11