PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m009031
Common NameLOC8264557, RCOM_1618730
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 236aa    MW: 26191.4 Da    PI: 8.8902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m009031genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1654103255
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa  ++ a++ l+g
  30174.m009031  54 KYLGVRQRP-SGRWVAEIKDaS----QKLRLWLGTFDTAEEAALSYDSAARLLRG 103
                    899******.7*********44....46***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-2853112IPR001471AP2/ERF domain
PROSITE profilePS5103220.69254111IPR001471AP2/ERF domain
SMARTSM003801.0E-3454117IPR001471AP2/ERF domain
CDDcd000182.76E-3254113No hitNo description
SuperFamilySSF541712.75E-1954112IPR016177DNA-binding domain
PfamPF008476.5E-1154103IPR001471AP2/ERF domain
PRINTSPR003677.4E-85566IPR001471AP2/ERF domain
PRINTSPR003677.4E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MENKESPTDP SPNPCNSPTS TPLQTNDNTI EKGGKKMPMK QAKRGIIVNN KGRKYLGVRQ  60
RPSGRWVAEI KDASQKLRLW LGTFDTAEEA ALSYDSAARL LRGRNAKTNF PNDHHGNMVN  120
THQEICRLLG KNPRLHQLLQ HAVLKNHGKS LLSRRIPLVN QNERNQVDSS FNFDSLVEDT  180
IICSSSSADD HDHNQDGSDK FCGLSFGSCK VYSSVIVAPS FSASLCQVEE SKCKEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1751111263ATERF1
3gcc_A1e-1751111263ATERF1
5wx9_A5e-1739114175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m009031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512003.11e-178ethylene-responsive transcription factor RAP2-2
TrEMBLB9RE641e-177B9RE64_RICCO; Uncharacterized protein
STRINGXP_002512003.11e-177(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-26related to AP2 11