PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m009047
Common NameRCOM_1619100
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family DBB
Protein Properties Length: 177aa    MW: 19603.6 Da    PI: 3.8541
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m009047genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.2e-08849338
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + C+ ++  + +l+C++++ +lC++C + +H        H+
  30174.m009047  8 GDSCDSCHTAPCTLYCHTDSAYLCQNCDEFIHATnplalqHD 49
                   678*****************************6567777776 PP
2zf-B_box30.38.6e-105096242
       zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                   + ++C  +e+ ++++ C+ +   lC +C +e+H        H++vp+
  30174.m009047 50 RVWICIACENAPATFTCQADAANLCINCDTEIHLAnplpcrHNRVPI 96
                   5789*****************************66789999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.769653IPR000315B-box-type zinc finger
SMARTSM003361.2E-8653IPR000315B-box-type zinc finger
PfamPF006433.6E-6850IPR000315B-box-type zinc finger
CDDcd000215.90E-8953No hitNo description
PROSITE profilePS501199.9264996IPR000315B-box-type zinc finger
PfamPF006431.7E-75196IPR000315B-box-type zinc finger
CDDcd000211.15E-55296No hitNo description
SMARTSM003361.8E-55496IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLKGNPQGDS CDSCHTAPCT LYCHTDSAYL CQNCDEFIHA TNPLALQHDR VWICIACENA  60
PATFTCQADA ANLCINCDTE IHLANPLPCR HNRVPISPPP GIVPTSSTTY LDKSQVPLRD  120
TENEAMANKS IEELEQDEAD SWLLLDLDNN DDQSDSGFPY SEDVDEYLDL IELNSII
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m009047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015366.11e-130LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 1
TrEMBLB9RE801e-127B9RE80_RICCO; Zinc finger protein, putative
STRINGXP_002512019.11e-127(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.21e-40B-box type zinc finger protein with CCT domain