PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30178.m000862

Common Name

LOC8259708, RCOM_1627480

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 255aa MW: 29837.3 Da PI: 5.4437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30178.m000862	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.6e-23	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ ++ kw+vtk+ +eHnH+l+ 30178.m000862 78 EYYIAYGRHTGFTVRIHHNRRSRVNNMVIGQDFVCSKEGFREKKYIYRKDR-VlpPPPITREGCPAMLRLAFRDGVKWVVTKFIKEHNHTLM 168 59***************************************99883332.234899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.1E-21	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MESSSNQAFD SDDSERCFRV DNYDGHEFED DELSENIDLC LGEVDKIIEQ SNENLASICD 60 VIEPYIGMEF KSRDDAREYY IAYGRHTGFT VRIHHNRRSR VNNMVIGQDF VCSKEGFREK 120 KYIYRKDRVL PPPPITREGC PAMLRLAFRD GVKWVVTKFI KEHNHTLMSP SKVPWRGSAK 180 SSVSEDEKDG RIRELTIELN NERQRCKRRC AAYQEQLHMV LAYIEEHTNH LSSKVQEIVN 240 NVKELENEHL EESDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	RQRCKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30178.m000862

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527269.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015579708.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9SMQ0	0.0	B9SMQ0_RICCO; Uncharacterized protein
STRING	XP_002527269.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-43	FAR1 family protein

Link Out ? help Back to Top
Phytozome	30178.m000862
Entrez Gene	8259708