PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30178.m000863

Common Name

LOC8259709, RCOM_1627490

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 212aa MW: 24245.6 Da PI: 9.1415

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30178.m000863	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.1	1.3e-27	47	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ +++++ + +++r++ r gCka++ vk+ek+gkw+vt++e++HnH+l+ 30178.m000863 47 KFYVDYARRVGFVVRIMQRRRSGIDGKTLARRLGCNKQGFSPNHRNAMRPDKKPRSSAREGCKATILVKMEKSGKWVVTRFEKDHNHPLV 136 6********************************************9**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-25	47	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTVDLDKEVG AVDSSLGVGE RIESVQGDGI LEPYVGMEFD SEDDARKFYV DYARRVGFVV 60 RIMQRRRSGI DGKTLARRLG CNKQGFSPNH RNAMRPDKKP RSSAREGCKA TILVKMEKSG 120 KWVVTRFEKD HNHPLVITAN GFSTVGDKDK KIEELSRELE HQEQLCAVYR ERLLTFMNDV 180 AEQTEELSSK IQVIVDNVRK VESEVKKFSH RR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30178.m000863

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015579699.1	1e-156	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	5e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9SMQ1	1e-155	B9SMQ1_RICCO; Uncharacterized protein
STRING	XP_002527270.1	1e-155	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	3e-74	FAR1 family protein

Link Out ? help Back to Top
Phytozome	30178.m000863
Entrez Gene	8259709

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]