PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30178.m000864

Common Name

RCOM_1627500

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 209aa MW: 24398.6 Da PI: 9.3733

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30178.m000864	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.7	2.6e-30	46	133	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+ 30178.m000864 46 FYDAYATRLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 133 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-28	46	133	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSEDGEDMDQ TVDSSNGKEV TTAEESSDME PYVGMEFESE EAAKVFYDAY ATRLGFIMRV 60 DAFRRSMRDG KVVWRRLVCN KEGFRKLRPR RSENRKPRAI TREGCKAMIV VKKEKTGKWV 120 VTRFVKEHNH PLVAIPSNGR RSVLLSQTPD EKDVKIRELT AELQRERKRS AAYQEQLYTV 180 LRDMEEHSNH LSRNIEDVVQ SVREIESKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30178.m000864

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527271.2	1e-152	uncharacterized protein LOC8259710 isoform X1
Refseq	XP_015579730.1	1e-152	uncharacterized protein LOC8259710 isoform X2
Swissprot	Q9SZL8	2e-31	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9SMQ2	1e-152	B9SMQ2_RICCO; Uncharacterized protein
STRING	XP_002527271.1	1e-153	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-94	FAR1 family protein

Link Out ? help Back to Top
Phytozome	30178.m000864

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]