PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30180.m001071
Common NameLOC8269294, RCOM_1637360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 237aa    MW: 26544.4 Da    PI: 8.487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30180.m001071genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-1367113354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +++L
  30180.m001071  67 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVREL 113
                    58*************************8.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.35864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-1167116No hitNo description
PfamPF000102.4E-1067113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1368119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1368120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.9E-4151213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MQPDNSPEIS QLYRFLAENG VFNVGSCGLP AMQSLCSSSS SSYHNYPLEG SVITDMTPQD  60
RALAALKNHK EAEKRRRERI NSHLDKLRGL LPCNSKTDKA SLLAKVVQRV RELKQQTSQI  120
PGLDSFPSET DEITVLSGEY SSDGQLIFKA SLCCEDRSDL LPDLIEILKS LHLKTLKAEM  180
VTLGGRIRNV LIIAAEKDHS IESVHFLQTA LKSLIERSNS SDRSKRRRVL DHKIIMQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap30180.m001071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517323.11e-174transcription factor bHLH106
SwissprotO806747e-88BH106_ARATH; Transcription factor bHLH106
TrEMBLB9RUA41e-172B9RUA4_RICCO; DNA binding protein, putative
STRINGXP_002517323.11e-173(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]