PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30185.m000956
Common NameLOC8284573, RCOM_1657600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARF
Protein Properties Length: 1109aa    MW: 122194 Da    PI: 6.6724
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30185.m000956genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.44.7e-22139240199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++++
  30185.m000956 139 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDDKQ 231
                    99*****************************9445444.38************************************************..45677 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  30185.m000956 232 QLLLGIRRA 240
                    78**99997 PP
2Auxin_resp119.13.5e-39265348183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  30185.m000956 265 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 348
                    79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-42129268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40130254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-18138230No hitNo description
PfamPF023625.2E-20139240IPR003340B3 DNA binding domain
SMARTSM010192.4E-22139241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857139241IPR003340B3 DNA binding domain
PfamPF065071.6E-34265348IPR010525Auxin response factor
PROSITE profilePS5174526.4299971081IPR000270PB1 domain
PfamPF023091.8E-69981082IPR033389AUX/IAA domain
SuperFamilySSF542776.38E-610111075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MKTPPPNGVG VATAAASAST PNPTEGVEKK SINQELWQAC AGPLVSLPAA GTHVVYFPQG  60
HSEQVAASMK KDVDAQIPNY PNLPSKLFCL LHNVTLHADP ETDEVYAQMT LQPVPSFDKD  120
ALLRSDLTLK SNKPQTDFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELV  180
ARDLHDNIWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDDK QQLLLGIRRA  240
NRQPANLSSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVC  300
SNQISLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR  360
NRVSIWEIEP VTAPFFICPP PFFRSKRPRQ PGMPDDDSPD LDSIFKKTMP WLGDDIYMKD  420
PQSLPGLSLM QWMNLQQNPS LANSMQPNYM QSLSGSVLQN LAGADLSRQL GFSAPQLPQS  480
NNLQFNAQRL PQQAQLLDQL PKLQSLLNPL GTIIQSQQQL GDTSQQSRQN LATQNIPSSQ  540
VQAQILQPQT LVQNTNMLQQ QPSLKSHQLP RNHPQSMQQQ QQSQQQHIMG QNQQPNVIQS  600
QLPDQVSQHL QMSDNQYQHQ LLQKLQQQQQ SLLALQSLQQ PSQFMQLQDP QRQLLEASQT  660
FSRPTLPNQL PEMPQTTPTS LPQSNIQQQM TKNSSQTSGR FSQLPQQLKF QQQPGILSEM  720
AGDMGLPPSS AINQHSTAGS SILCAAAGAG LSGVTEEVPS CSTSPSTNNF ANAVQPMMSS  780
LAHQSTTLGE DMAQSAATLL SPGALEPISC NANIIKDIQQ KSDIKPSLNM TKHQNQGFFT  840
PQTYLNAATV QTDFLDTSSS TTSVCVSQNN NSSSCNPQSM LLRDTNQDGE LPADPRNNVP  900
YGSNVGGQVG VSLNSDHGLT KGIVGLGKDF SNNLSSGGML ANCENAKDPQ NELSSSMVSQ  960
SFGVPDMAFN SIDSTINDSS FMNRGPWAPP PQFQRMRTYT KVYKRGAVGR SIDITRYSGY  1020
VELKQDLARR FGIEGQLEDR QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ  1080
EVQQMSLDGD FGNSGLPNQA CSSSDNGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1712636945388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap30185.m000956
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519813.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLB9S1E40.0B9S1E4_RICCO; Auxin response factor
STRINGXP_002519813.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19