PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m010767
Common NameLOC8258416, RCOM_1673050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 305aa    MW: 34389.6 Da    PI: 7.6969
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m010767genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.5e-34662061128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                    lp+G++F+Ptd+e++ e+L++kv +++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  30190.m010767  66 LPAGVKFDPTDQEIL-EHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgsE 157
                    799***********9.99****9999956644322..22222333336**********.566667778******************7444465557 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v+s +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  30190.m010767 158 TRWHKTGKTRPVVS-GGMVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 206
                    88************.99************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3960225IPR003441NAC domain
PROSITE profilePS5100534.2766225IPR003441NAC domain
PfamPF023651.6E-1567206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTWCNNNSVD ERAIQLVTAG AAIPKENTTF VDKKPNEILI ITCPSCGHNI ELQDQAAAGI  60
QDLPGLPAGV KFDPTDQEIL EHLEAKVLSD TRKLHPLIDE FIPTLEGENG ICYTHPEKLP  120
GVSNDGQIRH FFHRPSKAYT TGTRKRRKVH TDEDGSETRW HKTGKTRPVV SGGMVKGFKK  180
ILVLYTNYGR QKKPEKTNWV MHQYHLGSNE EEKDGELVVS KVFYQTQPRQ CGTSMTNRSS  240
DDNNPIATHP SFVDYYNPAF ISYDHHESHN RESPPQLIPN LVVQGEGSSF FRLVAETSKG  300
KLQRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m010767
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572383.10.0NAC domain-containing protein 73
RefseqXP_015572430.10.0NAC domain-containing protein 73
SwissprotF4HY611e-121NAC10_ARATH; NAC domain-containing protein 10
TrEMBLB9RB870.0B9RB87_RICCO; NAC domain-containing protein 21/22, putative
STRINGXP_002509421.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-123NAC domain containing protein 10