PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m010825
Common NameLOC8287762, RCOM_1691830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 315aa    MW: 34611 Da    PI: 8.878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m010825genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-19112162256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  30190.m010825 112 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 162
                    59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.46E-17111171No hitNo description
SMARTSM003801.1E-36112175IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22112169IPR016177DNA-binding domain
PROSITE profilePS5103223.301112169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-31112170IPR001471AP2/ERF domain
PRINTSPR003673.9E-10113124IPR001471AP2/ERF domain
PfamPF008473.1E-13113162IPR001471AP2/ERF domain
PRINTSPR003673.9E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESMQANNAT FGFTNIGSSL SQLILAGGNS NTLDSIFSHC SSESTIACPV FEPLGSSVYL  60
RQRDLLQKFS EENRATSTIT SSNSYFSSNL PTTPLENSIR TSNYLAPSKK KLYRGVRQRH  120
WGKWVAEIRL PQNRMRVWLG TYDTAEAAAY AYDRAAYKLR GEYARLNFPN LKDPSKLGLI  180
DCNRLNALKT SVDAKIQAIC QKVRRERAKR TAAKKSNLNG NGCASENKGV KVDSSSPSLF  240
PSASASQSSS SLSPTVSELV SPTISEDGFW KCENSPPSVS TDCSILVPQV MEFEDCSLAR  300
MPSFDPELIW AVLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20108169163ATERF1
3gcc_A1e-20108169163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m010825
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509951.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W26e-66ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLB9RCR70.0B9RCR7_RICCO; DNA binding protein, putative
STRINGXP_002509951.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]