PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m010874
Common NameRCOM_1674290
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 210aa    MW: 23843.1 Da    PI: 8.8144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m010874genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-114188655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
            HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                   + +Er+RR++++  +++L +l+P+    +s+  +s  + L +A +YIk+Lq
  30190.m010874 41 KTIERNRRNQMKALYSQLNSLVPHH---SSREsVSLPDQLDEAANYIKKLQ 88
                   689*********************7...45555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.4013587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1140101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-54193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-84188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1241102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.26E-74392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAFASFYRID DKSHYQFRSF KRIVLPHLME NNPSCSTTDR KTIERNRRNQ MKALYSQLNS  60
LVPHHSSRES VSLPDQLDEA ANYIKKLQIK LEKMKERKDS LMGIERPNAS AGCSTRAGMR  120
LRSPQIEVNG IGSALEVVLV TGLDCQFLFN ETIRILQEEG AEIVNATFSV LDDTVFHIIH  180
SKVEDSAPSY EAARISKRLK KFAEDSAPSH
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m010874
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015584408.11e-133transcription factor bHLH162
SwissprotF4JIJ71e-46BH162_ARATH; Transcription factor bHLH162
TrEMBLB9RBD11e-155B9RBD1_RICCO; DNA binding protein, putative
STRINGXP_002509465.11e-156(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-49bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]