PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m010906
Common NameLOC8271428, RCOM_1675610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 80aa    MW: 9174.24 Da    PI: 9.7732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m010906genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-101457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+ E +l+ +a +++ ++   +W  Ia+ +g g+++ ++k ++
    30190.m010906 14 SWTPRENKLFEKALALYDKEtpdRWQNIAKAVG-GKSADEVKRHY 57
                     7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.4241065IPR017884SANT domain
SMARTSM007171.1E-91163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-61162IPR009057Homeodomain-like
SuperFamilySSF466891.27E-131369IPR009057Homeodomain-like
PfamPF002494.7E-91457IPR001005SANT/Myb domain
CDDcd001671.99E-81457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSSSYQASRN SSSSWTPREN KLFEKALALY DKETPDRWQN IAKAVGGKSA DEVKRHYDVL  60
IEDVKHIESG RVPFPNYKSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-32779375RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m010906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509493.11e-53protein RADIALIS-like 3
SwissprotQ1A1732e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9RBF93e-52B9RBF9_RICCO; Transcription factor, putative
STRINGXP_002509493.14e-53(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-34RAD-like 6