PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011120
Common NameLOC8265404, RCOM_1683570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 230aa    MW: 25995 Da    PI: 6.1715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011120genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-1657107155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + ++GVr ++++ +Wv+e+r+p   +k+ r++lg++ t+e+Aa+a++ a+++l+g
  30190.m011120  57 PVFRGVR-NRNNDKWVCELREP---NKKSRIWLGTYPTPEMAARAHDVAALALRG 107
                    579***9.888**********8...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1157107IPR001471AP2/ERF domain
SMARTSM003806.2E-2758121IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2058117IPR016177DNA-binding domain
PROSITE profilePS5103220.91658115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-3058117IPR001471AP2/ERF domain
PRINTSPR003672.4E-65970IPR001471AP2/ERF domain
CDDcd000183.00E-2759117No hitNo description
PRINTSPR003672.4E-68197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQTQFSDPYP FDKHESFSPS DSTTSRRAVH SDEEVLLATS YPKKRAGRRV FKETRHPVFR  60
GVRNRNNDKW VCELREPNKK SRIWLGTYPT PEMAARAHDV AALALRGKSA CLNFADSAWR  120
LPVPVSTDPN DIRRAAHEAA ELFRPQEFGG QVTRKFGSVV EQDAGEASSS DSKQEVSYID  180
EEDFLDMPGL LARMAERPLL SPPHYARNDG MELGDHLEAD IDVSLWSYSV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509703.11e-172dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ64e-67DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLB9RC191e-170B9RC19_RICCO; Dehydration-responsive element-binding protein 1F, putative
STRINGXP_002509703.11e-171(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.25e-59ERF family protein