PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011121
Common NameRCOM_1683780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 245aa    MW: 26415.5 Da    PI: 5.0052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011121genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1673121255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r  +++g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  30190.m011121  73 FYRGIR--SRSGKWVSEIREPRK---TTRIWLGTFATPEMAAAAYDVAALALKG 121
                    69***6..678*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-2773135IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1873130IPR016177DNA-binding domain
PROSITE profilePS5103219.87573129IPR001471AP2/ERF domain
PfamPF008474.1E-974121IPR001471AP2/ERF domain
CDDcd000186.42E-1674129No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2674129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MATDPYNLPT NLPQTQPLSA PSFDPNATTP IALDPLVSQF APTNPCDNPY SCFNKPLLAM  60
ATTSSAPNKR HPFYRGIRSR SGKWVSEIRE PRKTTRIWLG TFATPEMAAA AYDVAALALK  120
GGDAILNFPG SVGSYPVPAS SSSTDIRNAA IAAAAFKRNE MNSQELGQLQ ARMDDHNHTR  180
TSSTTNLMST TGPASDQGFV DEEALFHMPN LLVDMAEGML LSPPRITSSD DSPGTSDGEN  240
LWSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13711291272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509704.30.0ethylene-responsive transcription factor ERF027
SwissprotQ9CAN91e-49ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLB9RC201e-180B9RC20_RICCO; Dehydration-responsive element-binding protein 1B, putative
STRINGXP_002509704.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-40ERF family protein