PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011156
Common NameLOC8265444, RCOM_1685480
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 337aa    MW: 37054.1 Da    PI: 5.143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011156genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.22.3e-37341252102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++Fkkg+kell++i
  30190.m011156  34 FLTKTYQLVDDPSYDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDYFKKGEKELLRDI 120
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  30190.m011156 121 QRRKI 125
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.7E-6030123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.3E-3931123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3631123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.4E-3334123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMPLPLEQTG ESPAAGSGAG VGGGDSQRSI PTPFLTKTYQ LVDDPSYDDL ISWNDDGSTF  60
IVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFANDYFK KGEKELLRDI  120
QRRKISPTTG AATAAAAATV TVAAIPACAI SPSNSSEEQL ISSNSSPVAA AAVAAPIVRT  180
TSCTTTPEIL EENERLRKEN SQLSHELTQL KGLCNNILAL MSKYSSGQLN DHNNDNNSNN  240
HPLELLPVTQ TASQPKEAVG TPPSSAAVDE DVSPRLFGVC IGVKRKRKEE EEEKQGSNNQ  300
QESQEHELRS DVKSEPLDRK TSMQTDHHDP TWLELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25141232129Heat shock factor protein 1
5d5v_B2e-25141232129Heat shock factor protein 1
5d5v_D2e-25141232129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509743.10.0heat stress transcription factor B-2b
RefseqXP_015571565.10.0heat stress transcription factor B-2b
RefseqXP_015571571.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-102HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLB9RC590.0B9RC59_RICCO; Heat shock factor protein, putative
STRINGXP_002509743.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-71heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]