PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011257
Common NameLOC8287418, RCOM_1687910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 698aa    MW: 77739 Da    PI: 6.9227
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011257genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98e-094574941954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  30190.m011257 457 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 494
                    554459******************************88 PP
2BELL117.94.8e-38318389172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e++elqk+k+kLls+leeV++rY++y++q+++v+ssFeavag g+a +Y +lA+ka+SrhFrcL+d i+ qi
  30190.m011257 318 EFMELQKRKTKLLSMLEEVERRYRHYCDQMKAVVSSFEAVAGAGAAMVYSALASKAMSRHFRCLRDGIVAQI 389
                    679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.6E-60254387IPR006563POX domain
PfamPF075269.9E-49260385IPR006563POX domain
PROSITE profilePS5007112.179435498IPR001356Homeobox domain
CDDcd000864.56E-11438499No hitNo description
SMARTSM003895.8E-9438502IPR001356Homeobox domain
SuperFamilySSF466896.42E-17439504IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27441504IPR009057Homeodomain-like
PfamPF059209.5E-18455494IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MAREVCEDKS RNMASSSAAA GFCYSDVSSA SNPTIQTHLG NQIQGFESNQ EIFNLTTGME  60
MIGFSRNLQQ QQQQQSHDSN TTAAAMWKGF LNKAGNNNNS CAGPSSSKTI NESTSDFYQH  120
EFNKQEFTTG ISETSSENLI VGPTDSSSPG WQVHRLLVDD SNLRCVFPCE GNERPSQGLS  180
LSLSSANPSS IGLQSFELRH TSNHHDHNQQ QEQEMRFLNS SSRDGFFGKS PANTQHQQQM  240
MQDGFMTKAA TLHHQGQFQL RNSKYLGPAQ ELLNEFCSLG TKQSDQLRQK SSKPKQWENE  300
NGSSSSSASR KQSLCSLEFM ELQKRKTKLL SMLEEVERRY RHYCDQMKAV VSSFEAVAGA  360
GAAMVYSALA SKAMSRHFRC LRDGIVAQIH ATKKAMGEKD PVAPGTTKGE TPRLRILDQT  420
LRQQRAIQQM TMMESHPWRP QRGLPERSVS VLRAWLFEHF LHPYPSDVDK HILARQTGLS  480
RSQVSNWFIN ARVRLWKPMV EEMYLEETKE QDNNMASPDG ITDLEDNNGR PSQNLSSTDQ  540
KPTPDQLIRV DSECLSSIIS NPDKNDISKT TKTFQNHHHL HTQQQQQQHN FGAFGAVELD  600
ISSYNHHAAG GVSYANDHGG NHQNFNGGGV SLTLGLQQHG GSGGVSLAFS PASQSSLFYS  660
RDHIDDCQPV QYSLLDGEGQ NLPYRNLMGA QLLHDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15444502563Homeobox protein Meis2
3k2a_B2e-15444502563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011257
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571681.10.0homeobox protein BEL1 homolog
RefseqXP_015571687.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-153BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLB9RCF90.0B9RCF9_RICCO; Bel1 homeotic protein, putative
STRINGXP_002509843.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-143TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]