PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011307
Common NameLOC8258424, RCOM_1673230
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-other
Protein Properties Length: 1732aa    MW: 195270 Da    PI: 5.4434
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011307genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-182984156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   r kR+  t+ qle+Le++++ + yps++ r+eL+++l+Lt+rq ++WF+ rR k+k
  30190.m011307 29 RPKRQMKTPFQLEALEKAYALDTYPSEKVRAELSQRLNLTDRQLQMWFCHRRLKDK 84
                   579***************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-17884IPR009057Homeodomain-like
SuperFamilySSF466891.41E-162087IPR009057Homeodomain-like
PROSITE profilePS5007116.6012686IPR001356Homeobox domain
SMARTSM003893.8E-172890IPR001356Homeobox domain
CDDcd000866.38E-132980No hitNo description
PfamPF000465.5E-162984IPR001356Homeobox domain
SMARTSM005713.2E-22545604IPR018501DDT domain
PROSITE profilePS5082716.504545604IPR018501DDT domain
PfamPF027916.8E-17546601IPR018501DDT domain
PfamPF050664.5E-16727795IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.4E-7933977IPR028942WHIM1 domain
PfamPF156134.0E-1211111183IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1732 aa     Download sequence    Send to blast
MEVNSCSDEE NNQNNGNNTN NKIADGQSRP KRQMKTPFQL EALEKAYALD TYPSEKVRAE  60
LSQRLNLTDR QLQMWFCHRR LKDKDKKEEK KETPSNRKRK AVHLSESPVE EMRAIIPEPG  120
SDDGSGSGSG SSPFMDPRKV VSADVPMNRR YYESSPQSVM ELRAIACVEA QLGEPLRDDG  180
PILGMEFDPL PPDAFGEPIS MVEQQKRSAH SYDGKVYERH NTKSSKAFAR VFHEYQFLPD  240
QSSIRSDAYG QVAQSPYHDS PVDNLRGRAS LVLGDEPLSR GHGVQGSRVR LFSQPEKKGH  300
VFSSPRRDDD YLLQHDSYTN NRISAQTSSH PIMGSENPDG FSDAQILHTE TDVWMEKKRK  360
IDEARTVRDP EANEYRIRKE LEKKDQLRRK NEERIKKDME RQDRERRKEE ERLMRERQRE  420
EERSLREQKR ELERREKFLQ KEYLRAEKMR QKEELRKEKE AVKRQAAIEK ATARRIAKES  480
LDLIEDEQLE LMEIAVASKG LASIVHLNYD ALQSLESFRD SLSMFPPQSV QLTKPFAIQP  540
WMDSEENIGN LLMVWRFFIT FADVIGLWPF TLDEFVQAFH DYDSRLLGEV HVSLLRLIIK  600
DIEDVARTPS IGLGTNQYSP ANPEGGHPQI VEGAYMWGFD IRNWQRHLNP VTWPEIFRQL  660
ALSAGFGPRL KKKGTAWTYL GDNDEVKGCE DTISTLRNGS AAENAFALMR ERGLLLPRRS  720
RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL ADKIQKSGLR DLTTSKTPEA SISVALTRDQ  780
KLFERIAPST YCLRAAYRKD PADAEAILSA ARKKIRIFEN GFLGGDDADD VERDEESEGD  840
VEEDPEVDDL ATPLTANKSA VHSNEANTCS GSGKDNVCSG VPLSIKNELV KEPSSVPSNG  900
LKDAKTPSIE QCVAQDVVAA NIDEENIEID ESKSGESWIQ GLAEAEYAHL SVEERLNALV  960
ALVGIANEGN TIRSVLEDRL EAANALKKQM WAEAQLDRSR LKEDIMSKLD FSSSIGVRAE  1020
LQVASSAVEG SQSPLLLVDS KSKEASPSTG EDQKSLLASE SVPTEKQLVV QDPSSNPDNF  1080
SSQQHGYGSK RSRSQLKAYI GHIAEETYVY RSLPLGQDRR RNRYWQFVAS ASKNDPCSGW  1140
IFVELHDGNW RLIDSEEAFD ALLSSLDTRG VRESHLRIML QKVEKSFKDN IRRNLHSRAT  1200
AETEACEADS SSICSAGYGS PTSMVCGSNL DTSNTSSLFR IELGRNEMEK KGALKRYQDF  1260
QKWMWKECFN SLTLCAMKYG KKRCIQLLAT CEWCFDSYLA EDTHCLSCHQ TFSTANKSFN  1320
IFEHEVQCKD KTKLDHGVCD SSLPPGIRSL KALLSLIEVS VPAEALESFW TENHRKTWAM  1380
KLNKSSSTEE LLQMLTVLES AIKRDCLSAN FEMTKEFSGG SILSHSALHS RADLRSVPVL  1440
PWIPKTTAAV ALRLFDLDAS IAYIQREKAE PSEDKPIKLF MKLPSRYSPL KNKEVELKEL  1500
KQEHVKEDRF TDVRNKRNSC KRGGRGGSDQ GYGTKSRKRV PGIKSNANRR NAGEIGKLNM  1560
GPRQQGRRTT AQLSGRGRRT VRKRRAEVMV AEETLINRLS DTVVPRSYGG SLRSLAEEDW  1620
GDEKIGMDVD DADNSNSVEA AESDDNVEAE EFEQGNWEQS FSRGFNGWNR NSIEMSDDDG  1680
DASGDDNVIE DAGVEDSEED IDTSEGSGRV PNNNKMENDE GTDSEASDDY SE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509429.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLB9RB950.0B9RB95_RICCO; Homeobox protein, putative
STRINGXP_002509429.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1