PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011321
Common NameLOC8258437, RCOM_1673760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 255aa    MW: 28011 Da    PI: 8.7045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011321genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202777256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  30190.m011321 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 77
                   69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-382790IPR001471AP2/ERF domain
CDDcd000187.37E-192784No hitNo description
PfamPF008475.3E-142776IPR001471AP2/ERF domain
PROSITE profilePS5103223.8942784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-322784IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-222785IPR016177DNA-binding domain
PRINTSPR003675.4E-112839IPR001471AP2/ERF domain
PRINTSPR003675.4E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPRDKTAAV KANGNCNSGV PGVKEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAARAYDAA AREFRGAKAK TNFPLACENV NKNIFLSKQN DTTKVNAIAN NNNNNNSNQS  120
PSPSSTVESS SRETPALTME SSSPLDLNLG PSSAVRFPFQ AVPGLGGVFT APVVNHHQQH  180
VLYFDAMVKS QYERLLFDPH QQRHQHQQAM MFGGGGVQSD SDSSSVVDLN QNEINNPPPR  240
SFDFDLNLPA EPEFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212385164ATERF1
3gcc_A2e-212385164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011321
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509442.10.0ethylene-responsive transcription factor 4
TrEMBLB9RBA80.0B9RBA8_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002509442.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9